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To overcome these limitations, we report a portfolio of reagents for the enrichment and visualization of myristoylated proteomes and direct MS detection of lipid modification of protein N termini.
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Gene Ontology (GO) enrichment and visualization of microarray results were performed according to the described methods [ 13, 22, 59].
WebGestalt was used for gene ontology (GO) enrichment analysis and visualization of the ontology trees (Zhang et al. 2005).
For gene expression data Vanted supports the computation and visualization of enrichments in the context of the GO [ 48] and the KEGG pathway [ 22] hierarchies.
The enrichment and annotation of functional categories in the set of genes with significant splicing changes or differentially expressed upon RBM10 perturbation was computed using the Database for Annotation, Visualization and Integrated Discovery (Huang et al, 2008, 2009).
The key lesson learned from the bottom-up development process is that by attending to individual image details, the developed visualizations: 1) are responsiveness to answering specific CM questions, 2) apply state-of-the-art data visualization techniques, 3) fit within an environment architecture, and 4) allow for the enrichment of design guidelines and lists of common visualization features.
This step is essential for PTM enrichment analysis and visualization.
Bioorthogonal chemistries have enabled the creation of MCRs for the visualization and enrichment of a wide array of PTMs including glycosylation, lipidation, methylation, and different forms of acetylation.
The LRpath web application provides a user-friendly web interface, the choice of 16 different annotation databases (see Methods for details), and enables visualization of the results of multiple enrichment tests.
Their personal enrichment came to be seen as a precondition for the enrichment of everyone else.
Summary: ENViz (Enrichment Analysis and Visualization) is a Cytoscape app that performs joint enrichment analysis of two types of sample matched datasets in the context of systematic annotations.
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