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We have used these arrays to develop robust statistical tools for the analysis of the microarray data.
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The thresholds for the analysis of the microarray data were defined as corresponding to those used for the Q-RT-PCR data analysis by using the QQ plots.
There are numerous software packages for the analysis of spotted microarray experiments.
Ratio-based analysis is the current standard for the analysis of dual-color microarray data.
Methods used for statistical analysis of the microarray data have been described above.
The scheme for analysis of the microarray data is depicted in Fig. 5A.
ME was responsible for analysis of the microarray data.
To extract commonly changed genes, we applied the principle of the significance analysis of microarrays (SAM) method [ 17] for the statistical analysis of the microarray data.
GenePix Pro 4.0.12 software was utilized for image analysis of the microarrays.
For the analysis of promoter binding the promoter microarray design for X. tropicalis can be used.
This chapter presents ACME (Algorithm for Capturing Microarray Enrichment), a computer program developed for the analysis of data obtained using NimbleGen‐tiled microarrays.
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