Sentence examples for for reference transcriptome from inspiring English sources

Contig ID for Reference transcriptome.

We used the Gene Index Assembly protocol [ 39, 40] for reference transcriptome assembly in alfalfa.

Measurement of gene expression was computed using Trinity assembled denovo contigs of both sugar fed and blood fed salivary transcriptome, which were merged at 90% identity using CD-HIT algorithm for reference transcriptome buildup.

Moreover, the public availability of the sequences, functional annotation and the global variant analysis, as well as the sequencing of raw data to be released from this study will provide a source of valuable information for biotechnology assays and genetic improvement of rubber trees, an addition to be used for a reference transcriptome for further sequencing projects.

Similar percentages were estimated for the reference transcriptome except for the fact that AGC/GCT was more abundant than AG G/CCT

For the reference transcriptome, UCSC hg19 GAfor1 for KnownGenes [ 28] was used, with genes located on non-standard chromosomes removed.

Because the focus of this study was to collect diverse samples for the reference transcriptome, constraints on collecting age-matched males for comparison with adult females prevent a powered analysis of sex differences in gene expression in the adult stage.

Raw reads were filtered as described for the reference transcriptome library.

It is therefore advisable to initially aim for a reference transcriptome providing a blueprint of an expression profile within a broadly defined time-frame.

This exceedingly large genome size highlights the crucial need for a reference transcriptome in order to initiate serious genomic analyses of this species.

To generate a fasta file of transcripts for a reference transcriptome, the BEDTools "getfasta" utility version 2.17.0 [ 29] was used to extract the transcript sequences specified by coordinates in the Ensembl GTF file, from the reference genome sequence.