Sentence examples for for processing modENCODE data from inspiring English sources
The completed DCC pipeline for processing modENCODE data sets is a multistep procedure.
In recognition of this challenge, the modENCODE DCC has released uniform computing resources for analyzing modENCODE data on Galaxy (https://github.com/modENCODE-DCC/Galaxy), on the public Amazon Cloud (http://aws.amazon.com), and on the private Bionimbus Cloud for genomic research (http://www.bionimbus.org).org
modMine provides the interface for accessing modENCODE data files and querying metadata, which are loaded as converted ChadoXML from the BIR-TAB format (14).
MDP is responsible for the curation of modENCODE data.
The modENCODE data for dCTCF insulator sites from 0- to 12-hour embryos were obtained from the White Lab project on the modENCODE web site http://www.modencode.org[ 50].
These nucleosomes are also visible in modENCODE data for mononucleosomes prepared under native conditions, but not upon formaldehyde-crosslinking, presumably because they become crosslinked to the centromere.
modENCODE data for D. melanogaster suggest that two of its SDMA genes are expressed predominantly in the gut (FBpp0072030 in the midgut and FBpp00787785 in the hindgut), with others being expressed during different developmental stages (www.flybase.org).org
Using these resources provides a framework for running consistent and reproducible analyses on modENCODE data, ultimately allowing researchers to use more of their time using modENCODE data, and less time moving it around.
This DCC staff is charged with tracking, integrating and promptly making available to the research community all modENCODE data generated for the two organisms being studied.
This gene is related to pasha (a gene involved in primary microRNA processing and gene silencing by miRNA) and according to modENCODE data, it is expressed.
