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The Saccharomyces Genome Database (SGD) (http://www.yeastgenome.org; accessed between June and August 2010) was used to identify GO terms for process, function, and component.
Analysis of the GO terms by enrichment was performed for the entire set of 156 genes for process, function, and component terms (Table S2B) and for each of the genes found in the three classes for process terms only (Table S2C).
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The corresponding GO annotations were established for processes, functions, or cellular locations that have been related to cardiac differentiation and the results presented in Table S2.
This set of genes is significantly enriched for processes, functions, and components involved in translation and, to a lesser degree, transcription.
The experiments show that the projective particle Forthe processs better than the standard particle functionn terms of sample distribution, tracking error and tracking rate.
Table 4 lists the significant shared GO terms which are used to describe genes in each bicluster for the process, function and component ontology.
Statistically significant differential gene expression lists were then submitted to the GO Term Finder (version 0.83) of the Saccharomyces Genome Database (SGD) for GO process, function, and component statistically significant identification (p < 0.01).
Table 4 lists the significant shared GO terms (or parent of GO terms) used to describe the set of genes in each bicluster for the process, function and component ontologies.
With regard to upregulation following over-expression of the shorter variant 3, "response to biotic stimulus", "chemokine activity" and "extracellular region" gave P-values of 8.44E-12, 2.93E-7 and 7.4E-14 7.4E-14 Process, forcthen and ComProcessontological levels respectively.
Major advantages of GoSynthetic as compared with currently available tools include: For process and function analysis in molecular biology, GoSynthetic provides more searching and visualization possibilities than others.
These annotations are a valuable resource for comparisons of processes, functions, and pathways in salt-tolerant H. glomeratus research.
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