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The annotated chromosomal positions were used for overlapping analysis with 3'-end exon sites.
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For overlap analysis of both our identified CNVs and previously reported CNVs in DGV, we used "scan_region.pl" script provided by penncnv algorithm.
These names could be read into 195 structures via synonym queries, e.g. for overlap analysis with other platforms or query of related studies.
Also for overlapping community analysis shown in Table 1, we plotted comparison based on communities obtained with existing algorithm and overlapping communities clusters obtained with MMOC algorithm.
We then repeated the correlation in fluctuation analysis for overlapping, non-overlapping and non-responsive pairs by replacing x with x'.
Those 295 hotspots are used to check for overlapping with the results of mediation analysis.
Each sample is analyzed for overlapping events in copy number and gene expression analysis.
The two extra inches is for overlapping.
Be on the lookout for overlapping clothes.
Includes supplemental figures for the overlap analysis of nourishment and caste and the results of the validation by comparison to qRT-PCR data.
For this overlap analysis, UP genes from the Cav-1 stromal data set with a fold-change of > 2.0 (KO/WT) and a P value of < 0.1 were utilized for comparison with existing gene sets in the data base.
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