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For visualization and analytical purposes, we used Cytoscape (Shannon et al., 2003), which is a software for network visualization, enriched with a plug-in we developed to enable loading, visualizing and inspecting the three aforementioned objects (compressed networks, stories, anthologies) inside Cytoscape.
The results from GSEA are then visualized through the enrichment map [ 9], a Cytoscape plugin for network visualization.
Dynamic graphics for network visualization.
OurSignedPPI online tool also allows for network visualization.
The resulting correlation matrix was transformed into a Cytoscape dataset in R. Cytoscape v2.8.2 was then used67 for network visualization and topological analysis.
Visugraph software is used for network visualization.
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Software developers can use biographer for network visualizations on their own web sites.
All computations for network visualizations were generated in the R environment.
JavaScript components for associative network visualization were developed for a scientific yet intuitive way of analyzing and exploring the data.
Accordingly, this Data Expedition uses these datasets as a basis for a network visualization exercise.
Cytoscape [ 17] was used for interaction network visualization.
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