Sentence examples for for motif analysis from inspiring English sources

Reversely the morphological closing filter coupled with horizontal line-segment structuring elements with lengths equivalent to the motif limits for roughness and waviness provides an alternative for motif analysis.

FIRE was used for motif analysis [38].

Phylogenetically conserved sequence between Human (Hg18) and Mouse was selected for motif analysis.

For Motif analysis, we used Motif-X v1.2 (http://motif-x.med.harvard.edu/motif-x.html) [9].

Homologous groups of genes (tBLASTx scores >170) from the other trypanosomatids analysed were also collected into clusters, their UTR sequences estimated using Splicemodel and masked using Tandem Repeat Finder [61], and finally used as input for motif analysis with Trawler.

Intergenic sequences upstream of the two gene TA operons were collected for motif analysis.

For purposes of motif analysis (see below), upstream promoter regions were defined relative to TSS.

For our motif analysis, we took log2-ratios between the microarray intensities for the immunoprecipitated sample and input sample, respectively, for each RBP.

The median for the motif scores was 7.3 and was used as a threshold for subsequent motif analysis.

Although the entire set of ZNF274 binding sites were used for the motif analysis, the two long motifs shown in Figure S8, panel A are highly enriched in the top 100 ranked peaks.

Consistent with arguments put forward in a recent review [40], integrated genomic approaches, such as expression and ChIP-Seq profiling used here, provide a much less arbitrary way to select regions for sequence motif analysis than pure in silico approaches and should therefore be widely applicable to study transcriptional dysregulation in disease.