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Further, the population size was set to (100); selection-pressure (1.1); number of operations (10,000); number of islands (1); niche size (2); operator weights for migrate (0), mutate (100), and cross-over (100) and with 100 GA run.
The three former programs measure long-term migration rates: they assume a constant migration rate over a long period of time (i.e., the time since the two populations separated from a common ancestral population for IM and the time necessary for all alleles to coalesce into a most recent common ancestor for Migrate or Lamarc).
To provide unscaled parameters we used the same mutation rate estimate as described for MIGRATE (see above).
For MIGRATE analyses, each diploid sponge individual was represented by two alleles/sequence types in the input file, whether it was homozygous or heterozygous.
Most of the default settings for MIGRATE were used on the first run, but the number of trees sampled was increased to 10,000 for the short chains and 100,000 for the long chains to avoid local maxima on the likelihood surface.
Migrate data to iTV Shows 3. At the bottom of the Settings window, you will see another option, this time for "Migrate data to iTV Shows 3".
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CEO of Professional Science Editing for Scientists @ prosciediting.com