Sentence examples for for microarrays were calculated using the from inspiring English sources

Global Pearson correlation coefficients for microarrays were calculated using the statistical software package R limma[ 27].

Relative expression levels between samples (the same as the microarray ones) were calculated using the delta delta comparison and expressed as fold changes, using Nipponbare or +P soil conditions for normalization.

For microarray analysis, cubic spline normalisation of expression data and all subsequent filtering steps were performed using BeadStudio and eXcel; P-values for all comparisons were calculated using the custom error model implemented in BeadStudio.

HPV infection statuses were genotyped by oligonucleotide microarray, and 10-year survival rates were calculated using the Kaplan-Meier method for 109 cervical cancer patients.

For direct comparison with microarray data, the relative changes of mRNA expression were calculated using the ΔΔct method (ΔΔct  =  Δct sample of interest – Δct control sample) [78].

Data for linear range, LOD, technical reproducibility and precision assessments were calculated using the median value of 100 replicate features for each RNA standard within each microarray.

The correlation between microarray and qPCR was calculated using the log-transformed values of the fold change obtained for the selected genes, obtaining an r-value of 0.95.

Adjusted P values for microarray data were calculated using LIMMA implemented in R, and the cut-off was at an adjusted P value <0.05.

The models were calculated using functions from the package Linear Models for Microarray Data (LIMMA) [ 29] in the statistical software R [ 56] implemented in UPSC-BASE.

After hybridization and washing, microarrays were scanned on a GenePix 4000 microarray scanner and fluorescence ratios (tumor/reference) were calculated using GenePix software.

The correlation coefficient (R) between qRT-PCR and microarray data was calculated using NCSS [ 74].