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This marker is critical for haplotype identification.
The TBC is an incremental algorithm [11], and it is remarkably linked with the Chinese restaurant process, previously employed both for the clustering of microarray gene expression data [12] and for haplotype identification in ultra-deep sequencing [13].
There is currently no software available for haplotype identification in more complex polyploids [ 2, 4].
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The haplotype allele incidence matrix, as described in Haplotype Block Identification section, is used in place of the SNP matrix.
Examples include single nucleotide polymorphism and haplotype identification for renal urate transporters in patients with hyperuricemia [ 80].
Haplotype identification and estimation of haplotype frequencies were done using PHASE for Windows, version 2.1 (http://stephenslab.uchicago.edu/software.html phase, last accessed March 3, 2014) (Stephens et al. 2001; Stephens and Donnelly 2003).
For easy association, the genome group identification number is the same as the character haplotype identification number.
Similarly, bringing in TLR4 SNP typing and TLR2 haplotyping for identification of variants or haplotypes linked to either increased risk of tubal pathology or protection from tubal pathology, respectively, is expected to provide for a more accurate diagnosis of Chlamydia trachomatis causing subfertility.
whap A tool for haplotype analysis.
whap is a C/C++ program for haplotype analysis.
For Y-SNPs, a total of 8 haplotypes were observed with the value of 0.684 for haplotype diversity.
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