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However, evidence for functional implications of MITEs in gene regulation through small RNA pathways is still lacking.
Since the global analysis does not reveal a direction in the changes and lacks functional detail, we scrutinized the pathways with most pronounced regulation for functional implications.
These files provide a rich data set that can be mined in many different ways for functional implications (see the discussion below).
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We performed bioinformatics and cis-expression quantitative trait loci (eQTL) analysis for functional implication of the identified SNP.
There is a variety of methods for the prediction of functional implications of missense mutations, each of which utilizes a different heuristic (see recent reviews [ 18, 19] as well as examples of recent methods [ 20- 22]).
Given the key role of CD8+ T cells in viral clearance, our work provides valuable insight for the functional implications of HBc141 149 epitope-specific T cell response in HBV infection.
Studies on leukaemias have provided paradigmatic examples for the functional implications of genetic and epigenetic alterations in cancer development [ 25, 26].
Additionally, the list of genes with high Ka/Ks values by intra-species comparisons can be further explored for potential functional implications.
This variant is one of few for which the functional implications are known: 66Met-BDNF localizes poorly to intracellular granula compared to 66Val-BDNF.
The differential localization and dynamics of TβRI and TβRII in adhesion-rich domains, relative to one another and to the whole cell TGFβ receptor population, indicates that this spatial control has functional implications for TGFβ signaling and for mechanotransduction. 10.7554/eLife.09300.010 Figure 4. Dynamic interaction of TβRs with integrins facilitate spatial organization.
The conformational flexibility of the N-HEAT region may provide significant functional implications, for example, adopting different conformations for the interactions with various mTOR regulators (Kim et al., 2008; Wullschleger et al., 2006; Zoncu et al., 2011).
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