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Dan Rabosky provided R code for fitting diversification models.
To examine the tempo and mode of diversification of Sigmodontinae we used R version 3.0.1 [ 35] in combination with the packages ape [ 36], diversitree [ 37], GEIGER [ 38], LASER [ 39], phytools [ 40], TreePar [ 41] and TreeSim [ 42].To correct for any sampling bias in our data, we applied an objective automated method for fitting diversification models to non-randomly sampled phylogenies.
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Results of fitting diversification models to the completed data sets for the sigmodontine radiation in Laser and TreePar.
Results of fitting diversification models to the empirical phylogeny of Sigmodontinae.
For fitting locations, visit www.mysoundcage.com.com
We restricted our lineage through time plots and fitting of diversification models to the early history of focal clades for two reasons.
The models come in for fittings.
For fittings no.
Come back for fittings.
We evaluate the significance of diversity bipartitions under Equal Rates Markov models, and use maximum likelihood model-fitting to test for shifts in diversification rates.
Even for Buffett, diversification is important.
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