Your English writing platform
Discover LudwigSuggestions(1)
Exact(60)
Patterns for histone density and FAIRE were consistent with open, nucleosome-poor and closed, nucleosome-rich chromatin states for expressed and non-expressed genes respectively (Supplementary Figure S5).
We did, however, observe that similarities between the ENCODE and whole genome datasets were most evident when we explored different binning strategies for expressed and non-expressed genes.
Data for expressed and non-expressed genes are provided in the Additional files.
The final array design applied a proprietary algorithm (imaGenes) that used different criteria for expressed and non-expressed genes.
DOI: http://dx.doi.org/10.7554/eLife.00523.009 10.7554/eLiFigure23.01 figuree 1—figure supplement 7. β-value distributions in distinct genomic features for expressed and non-expressed genes.
A high density genome scan was performed using a mouse SNP chip, and expression QTLs (eQTLs) were located for expressed transcripts.
We based our gene expression cutoff of 0.1 RPKM for expressed genes on several considerations: our experimental cell lines are lymphoblastoid, which are smaller than average sized cells.
Using a strategy of database searching for expressed sequence tags (EST) we identified putative expression of equine β-defensins in hepatic tissue.
NCBI's BLASTN program (http://www.ncbi.nlm.nih.gov/BLAST/) [28] was used to search the Expressed Sequence Tags Database (dbEST) [29] for expressed human MITE sequences.
Transcription factors with fewer binding sites for expressed miRNAs tend to show a higher variability in their expression between tissues than those with more binding sites.
To compare total expression levels for each gene category, we summed expression levels across the three VMN or H sample groups for expressed genes (tissue sum > 0).
Write better and faster with AI suggestions while staying true to your unique style.
Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com