Sentence examples for for every alignment from inspiring English sources

For every alignment, 20% of sites were set to be invariant.

For every alignment the percentage of identity (%ID) was derived to calculate the distance d = 100-%ID.

Then, we infer for every alignment column c in W1 variants that are statistically significant given base error probabilities in c (see details later).

Once a reference database table is generated, it can be used for every alignment to that reference, and there is no need for it to be regenerated with each alignment.

For these analyses, we extensively relied on the egglib package [ 75] to implement the following pipeline: First, for every alignment the maximum likelihood phylogeny was inferred at the nucleotide level using PhyML 3.0 [ 76] under the GTR-Γ substitution model.

Supposing that the alignment scores follow an EVD, the E-value for every alignment can be computed from the alignment score z and parameters λ and μ as E= e−λ z −μ).

Using the above strategy, we inspect for every single alignment column the probability of observing SNDs and LPDs and for each pair of alignment columns all four combinations of probabilities of observing phased SNDs and LPDs.

For every such alignment pair, infer the fragment length.

Final consensus trees were produced for every phosphatase alignment integrating results from each method.

Likelihood mapping analysis was carried out to determine the phylogenetic content for every individual alignment, using PUZZLE [ 14, 23].

We then used jModelTest [ 21] to carry out statistical selection of the best-fit models of nucleotide substitution for every DNA alignment.