Sentence examples for for each sample based on the from inspiring English sources
Using a recent diabetes study and their class contrast (e.g., highly expressed in individuals with NGT versus those with DM2: [23]), we first derived sample-level differentiated genes for each sample based on the data distribution of samples from the Exclusion/Background class using MADe-based statistics (Figure 1).
To better visualize and quantify this result, the molar mass distribution has been calculated for each sample based on the molar mass reference standards shown in Fig. 2.
A further step in the understanding of the results may be obtained by calculating the 2 nL value, where n is the refractive index and L is the sample thickness, for each sample based on the interference fringes position[33].
The average concentration of 8-OHdG was calculated for each sample based on the standard curve.
The Fin was estimated for each sample based on the ratio between observed and expected number of the homozygous genotypes.
Expression values were calculated for each sample based on the number of FPKM (Mortazavi et al. 2008).
For the Sanganji Jomon sequences, different numbers of bases were trimmed in each sample based on transition rates; in sample A1, we trimmed the first and last 10 bases because this sample had more transversion substitutions at the end of sequence reads compared with sample A2 and B, whereas we trimmed only five bases in sample A2 and B. For the archaic humans, we trimmed five bases.
SNPs were called for each embryo and endosperm sample based on the average 11.7 million mapped reads.
All samples were standardized by random subsampling to 1885 reads per sample (based on the smallest sample size by default), using the sub.sample command (http://www.mothur.org/wiki/Sub.sample), for calculating richness (OTUs at ≥99% sequence similarity), rarefaction curves, diversity and community compositional indices and matrices to be used later for the statistical analyses.
Then, estimate a leaching fraction for the site sampled based on the shape of the salinity profile.
A multiscale integrator for the infinite swapping limit is also proposed to enable efficient sampling based on the limiting dynamics.
