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Resolution and support for branches differed based on the combination of markers used for each genus.
Sequences were aligned and manually adjusted in MEGA 5.2 for each genus.
For each genus and species-group name, associated synonyms are listed in a chronological order.
All the nonstructural proteins are encoded by a large polyprotein and expressed in the same order for each genus.
For each genus, the previous species diversity was compared with the revised diversity following DNA barcoding.
All analyses of geographic range use a single value for each genus, the maximum.
To analyse the data, the deep-sea body sizes for each genus were regressed onto the shallow-water body sizes.
Geographic range is calculated for each genus in each time interval in which it occurs in R [48] using the mapproj [49] and sp [50] packages.
Sequences of nuclear ribosomal large subunit (LSU) DNA were retrieved from GenBank for each genus found in our survey, and for an outgroup, Glomus intraradices (table S2).
For matK, it was possible to align sequences of taxa across seed plants, but not outside them (alignments were then performed for each genus).
For each genus, a data set of nuclear ribosomal ITS sequences was assembled that included outgroup sequences from its sister group in the genus-level tree.
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