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Add a spatial component appropriate for each array.
The fluorescence intensity for each array (sample) was normalized to the median florescence of the array.
We used the MAS5.0 algorithroughhrough the Affy for calculating phorbol myristate acetate detection calls for each array sample.
All probes for which normalized intensities were lower than the computed threshold were designated as background for each array.
The dashed lines indicate the largest ratio for each array.
This was done for each array separately.
For each array, GCOS output was imported as.
Then for each array, we calculate its GVL.
The mean intensity for each array was scaled to 100.
We have median-centered expression values for each array.
The LOWESS normalized log2-ratios for these features were averaged for each array.
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