The data are available at ArrayExpress, a public repository for microarray data (accession number E-TABM-104) [ 27].
The data are available at ArrayExpress, a public repository for MA data (accession number E-MEXP-367) [ 34].
The datasets used for the analyses described in this manuscript are available from dbGaP [ http://www.ncbi.nlm.nih.gov/gap]; specifically dbGaP accession number phs000095.v1.p1 for the GENEVA dental caries data, accession number phs000090.v1.p1 for ARIC and phs000091.v2.p1 for HPFS.
Accession numbers and the URL for data in this article are as follows: GenBank Overview, http://www.ncbi.nlm.nih.gov/Genbank/GenbankOverview.html (for mtDNA control region data; accession numbers EU700062-EU700080).
Biorepository procedures and processes for deposit, accession meta-data, accession validation, culture expansion, preservation, maintenance, validation testing, contamination testing, sample documentation, quality control, quality assurance, recipient distribution data, staff training, biosecurity, and bioinformatics data can be variable and patchy.
Newly sequenced Siberian (marked in yellow) and European (marked in green) samples labeled as in Additional file 4 and Additional file 7, for published data the accession number in indicated.
Accession numbers for data presented herein are as follows (for the complete mtDNA sequence accession numbers FJ004804-FJ004838 and for the HVS-I region sequence accession numbers FJ010662- FJ010785).
Normalised signal intensities were generated from Affymetrix CEL files (GEO database http://www.ncbi.nlm.nih.gov/geo, accession number GSE21749 for data generated and deposited by us, and accession number GSE4193 for data generated by Namekawa et al. [ 34]) using RMA normalisation implemented in R software (Bioconductor project, Limma package) [ 64].
The accession number for data deposited in Gene Expression Omnibus (GEO) is GSE24982.
GEO accession number for data pertaining to this publication is GSE16626.
The European Bioinformatics Institute ArrayExpress accession numbers for data reported in this paper are E-MTAB-1602 E-MTAB-1602 E-MTAB-1602
