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When we wish for congruence between expression and reception we are not necessarily engaged in an actual conversation anyway.
To examine whether the divergent lineages revealed by the ITS sequences represented potentially reproductively isolated cryptic species, we tested for congruence between genealogies from different loci using the partition homogeneity test and the topology-dependent permutation test.
Within C. coli the congruence between single locus trees, suggested by ST restriction within clades, was confirmed with likelihood values for congruence between competing ML trees outside of the –ln L values for random trees for all 7 MLST loci.
We included multiple representatives from well supported amoebal lineages in our analysis to (a) look for congruence between our results and other amoebozoan phylogenies and (b) test whether any or all organisms described as protosteloid amoebae fell into a clade of amoebozoans that also included the myxogastrids and dictyostelids, i.e. Eumycetozoa sensu Olive [1].
We used two alternative approaches to test for congruence between louse and symbiont phylogenies.
Application is likely to be particularly appropriate for species delimitation questions in the fossil record [ 57], or to test for congruence between morphological and genetic differentiation without resorting to using the other evidence as a prior hypothesis [ 8].
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Phylogenetic inferences of pollinator and Ficus sequence data were used for relative divergence timing estimation and for tests of congruence between them.
Additionally, the allele network illustrates significant genetic variation at this locus with 23 unique alleles in a 138 bp region (see Figure S1 for estimate of congruence between mtDNA and nuclear locus).
There are a number of possible reasons for the lack of congruence between patient preferences and test ordering.
As predicted by the hypothesis that host shifts are responsible for the lack of congruence between insect and plant phylogeny and taxonomy in section Galoglychia, we found evidence for several cases of chloroplast genetic introgression events.
To test for the significance of congruence between the chloroplast and nuclear datasets, Incongruence Length Differences tests (ILD) [ 93] as implemented in PAUP* ('partition homogeneity test' option) were conducted.
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