Sentence examples for for any given alignment from inspiring English sources

What we have not attempted to show is that for any given alignment the selected model is the actual model that gave rise to the observed data.

Moreover, Golubchik et al. ([3]) showed that the absence of amino acid residues often leads to an incorrect placement of gaps in the alignments, even when the sequences were otherwise identical, and, for a given alignment, not all amino acid positions will be aligned with equal confidence [4].

When all models generated for a given alignment have been evaluated, the predictor score distribution of the formers is assigned to the latter.

For a given alignment identity x, let Ix be the set of target strains with which the first segment has identity at least x.

Once the maximum likelihood for all available models is estimated and merged into a file by PalmDaemon, statistical information of the parameters can be accessed to evaluate the fitness of a model for a given alignment.

For a given alignment, the entropy of an amino acid position H x) is defined as H x) = −∑ P x) log P x) where x is one of 20 amino acid residue types.

For a given alignment, an additional 76 degrees of freedom would be appropriate if the class frequencies were chosen to give the largest likelihood for that alignment.

In phylogenetic model comparison, we wish to choose between two competing models as the better explanation for a given alignment.

We present an algorithm that automatically selects a partitioning scheme for a given alignment without the need for pre-defined subsets.

Furthermore, it implements a sequential, PThreads-parallelized and MPI-parallelized algorithm for computing all quartets or a subset of quartets for a given alignment.

However, the group was not sensitive to phylogenetic model selection as both MrBayes and phyML generated consistent topologies for a given alignment irrespective of the substitution model.