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Data was collected using spreadsheets and imported for analyzed using SPSS 20.0 statistical software (IBM Corp, Armonk, NY).

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Data was checked for completeness and analyzed using SPSS for windows ver. 16.0 (SPSS , Inc 2007).

Risk factors for infection were analyzed using multinomial logistic regression.

In total, 4 biological and 3 technical replicates were made for each sample analyzed using qPCR.

Assets and sources of energy for cooking were analyzed using principal components analysis (PCA).

Data for Figs. 5,7and8were analyzed using a two-way analysis of variance (ANOVA).

Images for each slide were analyzed using the CodeLink™ Expression Analysis Software v4.1 GE Healthcare Life Science).

Data were analyzed using SPSS for windows (version 8.0).

Data were analyzed using SPSS for Windows™ (Version 14, SPSS Inc).

The data for the enzyme assays was analyzed using MS Excel.

Images were analyzed using BlueFuse for microarrays (BlueGenome, Cambridge, UK).

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