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We computed the averages for all benchmarked applications to focus on overall trends, in addition to individual benchmarks.
Overall recall values were above 90% for all benchmarked software except for PA 2.5, which seems to have an especially low recall (11.5%) for membrane proteins.
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For statistical reasons, it's all benchmarked against a fictional, worst-case scenario country called Dystopia.
For all these benchmarks, the BLOSUM62 scoring matrix with the gap penalty of 10 and 1 for the Gap Opening and Gap Extension, respectively, is selected.
Figure 4 shows the results of all benchmarks for the overall best parameter set of the compared methods.
We observed that for all benchmarks, designs can be successfully synthesized and simulated at required frequencies.
The particle mass remained fixed at 109 solar masses for all benchmarks as previously mentioned.
The freely available Microsoft Virtual PC 2007 (Version 6.0.156.0) was downloaded from Microsoft and was used for all benchmarks and teaching VMs.
Due to similar algorithm mapping structures and the same simulating frequency, the evaluated platforms can achieve the same system throughput for all benchmarks except for 64-point FFT.
Table 4 summarises the number of runs required by MBPTA (R) and ReVS in the miss domain for both DL1 and IL1 for all benchmarks.
The microarchitecture parameters show that NHM has a lower CPI compared to ATOM for all benchmarks and higher memory bandwidth and lower Last Level Cache (LLC) misses.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com