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The best fit was obtained typically using a triple exponential function as shown in Figure 1c, which is common for all array samples of the high-density Si NDs.
The separation of the experimental groups can also be seen in Figure 2F, where the first two principal components are shown for all array expression profiles.
Mean ratios and standard deviations (SDs) for all array elements spotted in triplicate were calculated and the datasets normalized to the median ratio per hybridization.
Data were expressed as the mean log2 ratio of Cy5/Cy3 fluorescence intensities, for all array elements representing a specified gene [39], [41].
This distribution of numbers was compared to the distribution extracted using the systematic names for all array features above a certain threshold (Fig. S4) using the wilcox.test function in R (http://www.r-project.org/).org/
Probe annotations for all array platforms were updated to the hg18 genome build [ 33].
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Yet for all the array of treasures proffered by the golden age, the exhibition cannot escape the dominating presence of Rembrandt and Hals.
The compressive elastic modulus of the arrays is obtained as a continuous function of penetration depth and attains a value between 10 and 20 MPa for all arrays during mechanical yield.
For all arrays RNA was assayed using direct labeling of experimental samples (Cy 3) and Stratagene Universal Human Reference RNA (Cy 5).
During the data preprocessing, M vs A plots, before and after normalization, and side-by-side boxplots for all arrays are used to assess array quality.
Affymetrix.cel files for all arrays were uploaded into the Partek Genomics Suite and intensity values were normalized using the GC-RMA algorithm.
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