Sentence examples for for alignment construction from inspiring English sources

For alignment construction, the algorithm integrates the M-Coffee algorithm [ 8] or Mafft for larger data [ 9].

For example, decreasing the contribution of SS score and putting more emphasis on residue similarity can potentially improve the detection quality among all α and all β proteins, where types and boundaries of SS elements are less informative for alignment construction.

Some common computational programs for multiple sequence alignment construction are MUSCLE, 4 DIALIGN 2, 5 T-Coffee, 6 CLUSTAL W, 7 and Kalign.

Finally, we propose new directions for the future development of multiple alignment construction and analysis methods.

Because they could be adjusted to generate a visible red beam instead of an infrared beam, they found immediate use projecting straight lines for alignment, surveying, construction, and irrigation.

With the proposal for the brand new Interstate 99 following U.S. Route 15's alignment, construction was upgraded once again, and a new alignment for U.S. Route 15 was started in 2005.

The details of multiple alignment construction are described below.

This was carried out with the construction of a RNAseq analysis pipeline comprised of GSNAP for alignment and genome construction, and Cufflinks to determine if differential expression and changes in transcript abundance were statistically significant.

Genomic Short-read Nucleotide Alignment Program (GSNAP) was used for alignment and genome construction, and Cufflinks to determine if differential expression and changes in transcript abundance were statistically significant [ 21, 22].

We optimized MP overspotting pin diameter, accounting for alignment error, to allow construction of large, high-fidelity arrays.

The proteins and their accession numbers used for alignment and phylogenetic tree construction are listed in Table  3.