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Subsequently, MD simulations are carried out using Gromacs [17]; We immersed each modeled structure into a 3D water cube of 127 Å side length allowing for a minimum distance of 20 Å between protein and box-boundary [18] and applied periodic boundary conditions.
First, we immersed the TCR/pMHC complex in SPC [ 22] artificial water bath (cubic box) allowing for a minimum distance of 2 nm between complex and box boundaries.
The proteins were embedded in an orthorhombic box of water molecules of suitable size as to allow for a minimum distance of 12 Å between the protein and any of the box faces.
Likewise, if the active CBH encounters another enzyme during processive hydrolysis it is programmed to stop at that point until the cellulose chain becomes free of enzymes for a minimum distance of two glucose units ahead.
First, we immersed the TCR/pMHC complex in a SPC [ 16] artificial water bath (cubic box) allowing for a minimum distance of 2 nm between complex and box boundaries.
First, we immersed penta-L-alanine in an explicit SPC [ 22] artificial water bath (cubic box) allowing for a minimum distance of 1 nm between peptide and box boundaries.
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Qigong treatments were delivered for 20 minutes from a minimum distance of 10 centimeters.
The analysis also indicates that wind PV-battery is economically viable as a replacement for conventional grid energy supply for a community at a minimum distance of about 17 km from grid.
For the same reason, sites situated at a minimum distance of 300 meters were selected for sampling.
These sites were chosen randomly for sampling but were separated by a minimum distance of 5 km.
Positive spatial autocorrelation was determined for age of juniper trees to a minimum distance of 21 m in current stand conditions, in contrast to no strong trends of spatial autocorrelation in 1860.
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