Sentence examples for for a full alignment from inspiring English sources

In Crenarchaeota, this tail appears to be involved in repair and recombination (Cubeddu and White 2005) (schematically represented by a striped box in fig. 5, for a full alignment see supplementary fig. S1, Supplementary Material online).

PAGAN reconstructs graphs for all internal and extant nodes (totalling 10 999 for a full alignment) and needs 627 s and 2070 Mb for the analysis of the same data.

In the current setup, the glocal mode for HMMER2 is enforced so that a full alignment with respect to the domain model can be made with the query sequence to maximize the belief of the domain's overall fold similarity when the hit is subsequently evaluated to be true.

A full alignment optimization combining an enhanced variant of the ANOLEA/SSE predictor (for scoring) and a genetic algorithm (for sampling) is currently under investigation.

We used the alignment shown in Figure  1 to construct a phylogeny of bacteriorhodopsins (see Additional file 1 for the full alignment).

For the full alignment and Bayesian Ka/Ks ratios obtained from the models, see Figure S3.

For the full alignment of 237,882 16S rRNAs, the supports required just one hour.

Maximum likelihood phylogenetic analyses were performed as described above for the full alignment for each strategy of long-branch exclusion on each of three partition sizes of interest (full alignment, A136665, A133065, as discussed in Results).

Both RSS and CSS are mostly found in the conserved regions of RIFIN proteins (see Additional file 4, rifins_high.html, for the full alignment with stringent cut-offs).

The complex model of substitution including gamma distribution and invariant sites (GTR+Γ+I) was selected for the full alignment by the hierarchical likelihood ratio test (LRT) as well as the Akaike information criterion (AIC).

The function shift analysis of sub-group A against sub-group B (using standard cut-offs of 4 for RSS and 0.5 for CSS) resulted in the prediction of 81 rate shifting sites (RSS) (22% of all positions) and 60 conservation shifting sites (CSS) (17%) between them (see Additional file 3, rifins.html, for the full alignment).