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Currently, there is little footprint data for S. coelicolor transcription factors and consequently transcription factor footprint data for E. coli was downloaded from the RegulonDB internet site [ 40, 41], which contained examples of 211 repressor sites, 77 activator sites and 341 dual regulator sites [see Additional file 2].
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Since the footprinting data for this analogue show few enhancements, bivalent binding of neo-acridine appears to stabilize the folded structure of RNA by effectively 'stapling' parts of the structure together.
Ordered plot for mRNA-seq and ribosome footprinting data for the histones at indicated stages.
Ordered plot for mRNA-seq and ribosome footprinting data for Ctf19 complex at indicated stages.
Ordered plot of the mRNA-seq and ribosome footprinting data for Mif2 at the indicated stages.
Ordered plot of mRNA-seq and ribosome footprinting data for the Ndc80 complex at indicated stages.
We used digital genomic footprinting data for the Saccharomyces cerevisiae genome from (Hesselberth et al., 2009).
Ordered plot of the mRNA-seq and ribosome footprinting data for Cbf3 complex subunits at the indicated stages.
Ordered plot of the mRNA-seq and ribosome footprinting data for KNL-1 complex subunits (Spc105 complex) at the indicated stages.
Ordered plot of mRNA-seq and ribosome footprinting data for the DASH complex components at indicated stages of sporulation.
Ordered plot of the mRNA-seq and ribosome footprinting data for Mis12 complex subunits at the indicated stages.
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