Sentence examples for following parameter settings from inspiring English sources

Scalpel (v0.1.1) was used as a representative of assembly-based callers to assemble the reads and call INDELs from each alignment separately, resulting in 20 INDEL call sets from these 20 alignments, using the following parameter settings: '--single --lowcov 1 --mincov 3 –outratio 0.1 --numprocs 10 –intarget'.

The MS together with MS/MS spectra were searched against the NCBI non-redundant viridiplantae database using softwares GPS Explorer (Applied Biosystems and MASCOT Matrix Sciencece) with the following parameter settings: trypsin cleavage, two missed cleavages allowed, peptide mass tolerance set to ± 0.2 Da, fragment tolerance set to ± 0.3 Da.

We used the Weka implementation of SMOTE42 to perform oversampling with the following parameter settings: nearest neighbours = 5, random seed = 1 and oversampling percentage = 500.

The following parameter settings were used: identity ≥70%, minimal hit length 75 bp, seed length 12 bp (exact commandline: -d -p -l 75 -identity 70 -seedlength 12 -exdrop 5).

The identification of full-length LTR retrotransposons with LTRharvest82 resulted in 143,957 non-overlapping candidate sequences using the following parameter settings: 'overlaps best -seed 30 -minlenltr 100 -maxlenltr 2000 -mindistltr 3000 -maxdistltr 25000 -similar 85 -mintsd 4 -maxtsd 20 -motif tgca -motifmis 1 -vic 60 -xdrop 5 -mat 2 -mis -2 -ins -3 -del -3'.

The following parameter settings were specified in the models fit in our analyses.

The five most intense ions were sequentially selected and fragmented in CID mode with the following parameters settings: isolation width of 2.0; automatic gain control value of 10000 ions; maximum injection time of 100 ms; m/z 50 2000 mass range; collision energy of 35%; minimum signal threshold of 200 counts; wide band activation on.

In the experiments shown in this section, unless stated otherwise, the following parameters and settings were used for the EFS: the depth of the synthesis was set to K = 7, meaning that 7 operators and K + 1 = 8 features were chosen for the synthesis process of each output vector element, and the total number of operators, listed in Table 4 for features f a and f b, was set to Θ = 18.

At the beginning, halfway through the experiment and prior to sampling, body composition was measured using the time-domain nuclear magnetic resonance technique (MiniSpec, Bruker, BioSpin MRI GmbH, Ettlingen, Germany) with the following parameters: X-ray energy settings: 45 kVp and 177 µA; voxel size: 76 µm; integration time: 300 ms; and projection setting: 250 projections per 180°.

The following default parameter settings in Beagle were used: five iterations for initial burn-in, five iterations for phasing, and five iterations for imputation.

To determine marker order within a linkage group, the following JoinMap parameter settings were used: Rec = 0.40, LOD = 1.0, Jump = 5.