Sentence examples for folding constraints from inspiring English sources

For analysis of both 5'- and 3'-terminal regions, alignments of the two sequences were linked with 5 nt forced to be unpaired by folding constraints.

The cloverleaf model (Fig.  3c) predicted by RNAalifold using base pairs from both the 5'-SL and the 3'-SL as folding constraints only differs from the panhandle model at nt 22-41 ant nt 619-634.

It is plausible that the integrity of ER proteins is less affected by changes in decoding speed of single codons during their synthesis due to the entirely different folding constraints imposed by co-translational translocation across the ER membrane.

Since a major aim was to report similarities reflecting evolutionary relationships or common folding constraints, the classification focused on global similarities where at least 60% of the larger protein could be well superimposed on equivalent residues in the smaller protein.

On the other hand, the carboxy terminus tails, which mediate tubulin functional specializations via interactions with other proteins, and are released from protein folding constraints because they lie on the surface of the MT [ 29], are the most rapidly evolving, and possibly under positive selection.

A journal published a paper today that reveals a set of folding constraints in the design of RNA molecules.

A difference of 0.32 Å is observed in the average B-RMSD values of PEP-FOLD (without constraints) and PEP-FOLD# (results as reported in PepLook Study).

Although it has become apparent that folding imposes constraints on protein sequence evolution, the effects exerted by different chaperone classes are so far unknown.

Based on the significance of expression fold changes, constraints on availability of reliable genomic structure (exon/intron) information, and known gene functionality, 11 upregulated genes, 7 downregulated genes, and 3 control genes were selected for ChIP analysis (Table 1 and Supplementary Table S4) in 24 hpf WT embryos.

The MFE of regional folding with constraint of unpairing at the target site (Δ Gunpaired) compared with that of the native fold (Δ Gfree) to assess the free energy of unfolding (Δ Gopen).

The only MVP sequence from the super group Plantae that falls within our criteria of folding without constraint in I-TASSER with a C score greater than −1.5 and a TM score greater than 0.5, other than rice and barley is a sequence from the single-celled green algae Chlamydomonas reinhardtii (UniProtKB A8JEL9).