Sentence examples for fold assignments from inspiring English sources

For these EC numbers, lists of all structures (PDB IDs assigned in KEGG) were collected whenever possible and checked for fold assignments in the SCOP database.

Fold assignments by searches in SCOP-NrichD and SUPERFAMILY database also showed very high rate of correct fold assignments, of 92 and 93 % respectively.

For each ORFan, the hits are confident fold assignments with 3D-Jury scores more than 50.

SCOP fold assignments to gene E. coli products were based on BLAST E-value of 0.001.

Secondary structure prediction and fold assignments of unannotated proteins were carried out using PSIPRED and GenTHREADER, respectively [ 51, 52].

To enable a direct comparison between RR-BLUP, LASSO, and elastic net, the same fold assignments were used throughout this study.

SCOP fold assignment for each query was assigned using the same search parameters as defined above for each method.

It involves fold assignment, sequence structure alignment, model building, and model evaluation.

Several methods rated the immunoglobulin-type fold most highly but with scores not high enough for confident fold assignment.

We interpret the ability of ab initio modeling to produce the Alba fold as strong evidence that this is indeed the correct fold assignment for the SpoVS family.

Calculation and evaluation of models were performed with ModPipe software using sequence-sequence, sequence-profile and profile-sequence methods for fold assignment and target-template alignment.