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To filter out probe sets whose corresponding genes are not expressed in the analyzed samples, Presence flags were computed according to Affymetrix MAS5 method.
Gene expression levels were normalized using the GC-RMA algorithm and flags were computed using MAS5 algorithm.
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In this illustrative analysis, the basic properties and HTS flags listed in Table 1 were computed, as well as the scaffolds and frameworks of each molecule.
Monthly averages were computed.
Several binary flags can also be computed to provide simple ways of filtering compounds using widely adopted rules.
If this is not suitable, the cardinalities can also be computed correctly by flagging to the PPCF application that submissions of all c k splits should be treated as one submission.
A present/absent flag (taking values 1 or 0) is computed by evaluating if the falloff between the feature centre and its sides is large enough.
Similarly, power rates are computed as the proportion of items that are simulated as DIF items that are also flagged as having DIF.
RAS was computed daily.
SES is computed daily.
No flags were thrown.
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