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Although these differences were not detected in the anova modeling as a main effect of sub-population, it is quite conceivable that these results reflect a slice through an epistatic interaction conditioned on loci that are fixed in one population or another.
Why this occurred is uncertain, but it probably persisted because wild cats were isolated from domestic cats and the change got fixed in one population, eliminated in the other.
To increase the number of SNPs for L. goodei, SNPs were used that were fixed in one population but were segregating in the alternate population.
Consider a mutation that increases fitness in the glucose component of a fluctuating environment, and which becomes fixed in one population.
If derived alleles have been fixed in one population and not in the other, as a result of positive selection, one might expect reasonably high values of Fst for alleles with extreme allele frequencies.
However, this understanding does not take into account that alleles that were fixed in one population also might have arisen before the split, but were fixed due to different selection processes or as a result of different bottlenecks on the populations.
Similar(53)
This excess was due to exchanges of variants among populations that were once fixed in one or several populations during isolation.
The user is prompted as to whether or not they would like a separate list of polymorphic STR markers that are "fixed" in one of their target populations.
We initialize the two populations where the Medea allele is almost fixed in one and almost lost in the other.
Most polymorphic loci exhibited macrogeographic uniformity of allele frequencies but in no case had any one allele become fixed in any one population.
Stationary robots are fixed in one place.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com