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Specific classes (GenomicPosition and GenomicInterval) are used to represent genomic coordinates or intervals, and these are guaranteed to always follow a fixed convention (namely, following Python conventions, zero-based, with intervals being half-open), and parser classes take care to apply appropriate conversion when the input format uses different convention.
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However, the need to write customized code will inevitably arise in many projects, and then, HTSeq aims to offer advantages over more narrow programming libraries that focus on specific file formats, e.g. PySam and Picard (http://picard.sourceforge.net/) for SAM/BAM files, by integrating parsers for many common file formats and fixing conventions for data interchange between them.
Briefly, Gödel argues that Carnap can treat arithmetic as fixed by convention only if he shows that the relevant convention does not generate a contradiction.
No member of the House of Lords had been prime minister since the time of Lord Salisbury's last administration (1895-1902), and Sir Alec's career must have fixed the convention that the prime minister must always be a member of the House of Commons.
Of course, word meanings may themselves be fixed by convention.
On the one hand, expressions have a standing meaning fixed by convention and known to those who are linguistically competent.
If your commonsense understanding of 'water' is governed by the proposed reference-fixing convention, it would lead you to identify different chemical substances as water depending on what your actual environment is like: if your actual environment is like Earth, then water is H2O; but if your actual environment is like Twin earth, then water is XYZ.
"Maps are never completely neutral, and in many ways their points of view are somewhat arbitrary," David Rumsey, the San Francisco-based collector of historical maps, has written, "even if fixed in conventions we take for granted".
The most well-worked out views on this topic are the Gricean view, which explains meaning in terms of the communicative intentions of language users, and the view that the meanings of expressions are fixed by conventions which pair sentences with certain beliefs.
They also questioned why the state had spent $41 million on world class architects for what is essentially a renovation to fix the convention center's leaky roof.
"If we can simply use the winds of the N.F.L. stadium as the economic engine to fix our convention center, it will be the driver that for generations will make sure that we once again prosper as a city".
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com