Sentence examples for fitting substitution from inspiring English sources

Using jModelTest [15] we found GTR+Γ+I [16] to be the best fitting substitution model.

The best fitting substitution models were chosen with jModeltest using the AICc for each dataset.

The JTT model [ 148] was selected as the best fitting substitution model.

The best fitting substitution models for each dataset were determined with the Akaike Information Criterion AICC) using ModelTest 3.06 [ 87].

We used jModeltest [ 95] using the Akaike information criteria corrected for small sample sizes (AICc, [ 96]) to determine the best fitting substitution models (GTR + G).

The jModelTest program [ 72] was used to select the best fitting substitution model according to the Akaike information criterion based on the 9,175 bp concatenated 4D-sites.

The GTR+G model was also included as the next best fit for all the datasets and to serve as a test for congruency of estimations when using a different well fitted substitution model.The MCMC estimation of node ages was performed with mcmctree.

The best fitted substitution model for each partition was estimated using Akaike information criterion (AIC) implemented in jModeltest [ 83].

For both data sets, gene fragments were trimmed to the overlapping region and ModelTest 3.0.4 [ 39] was used to fit substitution models to both taxa.

We estimated w ab by fitting a substitution probability matrix to each empirical amino acid substitution frequency matrix such as JTT with a maximum likelihood method [ 26].

The best-fit substitution model was estimated with PartitionFinder30.