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The structures were manually superimposed in PyMOL using the pair fitting command and translated thereafter.
Manual structural superimposition was performed by defining the equivalent regions using the pair fitting command of PyMOL.
The circularly permuted binuclear RING-like region of UBR-box (PDB identifier 3NY1_A) and the B-box domain (PDB identifier 3DDT_A) could be manually superimposed using the pair fitting command of PyMOL with an RMSD of 2.46 Å over 40 pairs of Cα atoms (Additional file 3: Figure S2).
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The atomic model was initially roughly placed in the rod density, and its position automatically refined with Chimera fit command.
But their fearless leader didn't seem fit for command.
This is phase one of the officer selection process: young men and women who pass here go on to Sandhurst, emerging 11 months later as second lieutenants fit to command a platoon of 30 soldiers.
The proportionality assumption of the Cox regression model was assessed graphically and with the use of Schoenfeld residuals using "estat phtest" STATA command after fitting a model with stcox.
Wavell reported that "Blamey has shown himself a fine fighting commander in these operations and fitted for high command".
Vaughan remained England's preferred captain for as long as he was fit and could command a place.
The Commandant of the Navy Yard responded on 25 September 1942 by informing the VCNO that, in his view, Hubbard was "not temperamentally fitted for independent command" and requesting that Hubbard be removed and ordered to "other duty under immediate supervision of a more senior officer".
Adjusting for covariates, the command fits separate Cox regression models for each group, and the separately calculated baseline survivor was then retrieved.
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