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Overseas dispersals are often invoked when Southern Hemisphere terrestrial and freshwater organism phylogenies do not fit the sequence or timing of Gondwana fragmentation.
Note that these models were identified as the available ML models that best fit the sequence alignments, according to the AIC criterion [ 40].
The penalty score was changed to fit the sequence divergence among genomes surveyed, so that longer hits with lower similarity (66.7%) can be retained.
Thereafter, we used PAUP* to fit the sequence data for each gene to the (pruned) supertree topology under the optimal model in a ML framework.
The IMa2 software (version updated 27/8/2012) [ 58] was used to fit the sequence data to an isolation-with-migration model, using the same intron alignment data as above.
Additionally, for the additional file 2, a ML analysis of mutagenized populations of FMDV was performed by means of the program Modelgenerator [ 61], useful to identify the optimal evolutionary model (Akaike Information Criteria and Hierarchical Likelihood Ratio Test indicated that the GTR model best fit the sequence data).
Similar(53)
Computers then fit the sequences of the separate pieces back together by finding overlaps between them and, presto!, the sequence can be read.Physical maps tell you a lot.
The additive model fits the sequence where seasonal and period components are obvious.
The curve fitting problem in (35) can be solved analogously to the problem of fitting the sequence (u k ) to an initial term structure of bond prices; compare with Proposition 6.1 in Keller-Ressel et al. (2013) and the corresponding proof.
The simplest model of sequence evolution that best fits the sequence data (GTR+G) was determined under the Akaike Information Criterion (AIC) in jModeltest 0.1.1 [40], [40].
To determine the simplest model of sequence evolution that best fits the sequence data, the Hierarchical Likelihood Ratio Test (hLRT) and Akaike Information Criterion AICC) were implemented using MrModeltest 1.1b [62], [62] in each data set.
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