Sentence examples for first three alignments from inspiring English sources

In addition, in Bowtie 2 alignments, options were set to report all alignments instead of in the previous experiment when the BWA default parameters were used (report first three alignments).

The first two alignments analyzed were a 153-position myoglobin alignment containing sequences from 42 tetrapods, and a randomized version of this alignment which was used as a negative control.

First, four alignment algorithms, BWA-short [ 32], BWA-long [ 33], SSAHA [ 34], and Super-maximal Exact Matching [ 35] we employed to identify a list of Candidate Mapping Locations (CMLs).

We used the STAMP platform for computing the first five alignment-dependent metrics scores http://www.benoslab.pitt.edu/stamp/, the Mosta package included in SABINE for computing the AC scores http://www.ra.cs.uni-tuebingen.de/software/SABINE/downloads/index.htm, and the web server of KFV for computing the KFV scores http://bioinfo.uncc.edu/kfv/.

Thus, the correct alignment of M2 and M3 will be inconsistent with the first two pairwise alignments.

We saw a geographical alignment of our first three PCs.

Third, we compute the probability of each of these three alignments based upon a binomial model.

The multiple-sequence alignment was analyzed in JalView 2.10.1 and the first three bases of haplotype 2.1 were corrected to positions 24–26.

The Giants used alignments of three wide receivers and one tight end on 28percentt of their offensive plays in the first three games, when Shockey was fully available.

First, one generates a multiple sequence alignment including both the new sequences and those from a ribosomal RNA collection.

A total of 9887 polypeptides sharing high similarities with these R. pomeroyi polypeptides were found and are listed in Additional file 7. The sequence and position of the first sixty amino acids of the alignment are also shown.