Sentence examples for first round of alignment from inspiring English sources
The first round of alignment was performed using SATé + PRANK, and the second round was performed using SATé + MAFFT.
In the first round of alignment, SATé-Prank [ 14] was employed to obtain the initial alignments, which were used to identify the aberrant over-aligned and under-aligned sequences.
Since the first round of alignment was against the D8 reference, restricting subsequent iterations to visit D8-related positions preserved the initial alignment of the particles against the reference while allowing the internal density to converge within the frame of TRiC after 17 iterations.
The detected junctions in each sample were pooled as raw junctions for the second round of alignment (default parameters and '--no-novel-juncs').
The aberrant sequences were then removed, and the second round of alignment were performed by SATé-MAFFT [ 14] for the filtered sequences to create the final multiple sequence alignments.
The hairpin (precursor) sequences of the cattle miRNAs with mature sequences that showed no more than two mismatches in the previous alignment step were then selected for a second round of alignments against the 57 vertebrate genomes.
Following particle extraction (with box sizes ranging from 350 380 Å), the initial stack was subjected to a first round of 2D reference-free alignment and classification using Xmipp ML2D to obtain classes with <2000 particles/class (Scheres et al., 2005a, 2005b).
In the offline case, all speech for a specific speaker is recognized first and then a warp factor is determined, since unwarped models and features are used in the first round of recognition, the recognition results (hence alignments) are moderately accurate.
The new set of sequences was run through MAKER2 with EST alignments and SNAP using the HMM file from the first round of training.
First Round of the Draft Smile.
