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We first phased the deletion in each parent with neighboring SNVs [ 23].
Genotypes were first phased based on family and linkage disequilibrium information [ 21].
Samples were first phased using SHAPEIT [ 37] and genotypes were subsequently imputed using IMPUTE2 [ 38].
(2) Calculate span (in reference base pairs) from the first phased SNP to the last phased SNP for every segment.
To compute h e and r 2, SNPs were first phased into haplotypes using fastPHASE 1.2 (Scheet and Stephens, 2006).
For this, variants were first phased by parental states, then a most likely state (B73 homozygous, CG homozygous, or heterozygous) was determined in 5 Mbp sliding window across the genome using a least squares based method.
Similar(53)
That was our first phase.
"This is the first phase".
First phase of the beginning".
That was the first phase.
"The first phase is 5-11.
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