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In the first frame of the simulation, half of the fluorophores were in the emitting state and half were in the not emitting state.
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This will be the first frame of the animation.
Every fifth frame of the pooled trajectories of the 2 individual simulations, i.e. separated by 10 ps, was considered for clustering.
(a) Second frame of the City sequence (first B-frame).
(b) Second frame of the Foreman sequence (first B-frame).
Draw the first frame of your animation.
This process was repeated at every frame of the simulation trajectory and the result temporally averaged.
The final frame of the simulation is shown in Figure 6.
We noticed that as we increased the pH in these simulations, we lowered the yield of total particles reaching hemifusion during the fixed time frame of the simulation.
Figure 2A shows the RMSD of backbone of TACE protein calculated in reference to the first frame over the entire simulation trajectory.
Yellow arrows indicate the first frames of RNAP binding events.
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CEO of Professional Science Editing for Scientists @ prosciediting.com