Sentence examples for first alignment from inspiring English sources

BWA alignments were performed using the bwa aln command with options –n 1, −o 0, and –e 0 and bwa samse with option –n 4. When doing a second alignment, the customized reference was updated, if necessary, to contain one of the alleles at predicted heterozygous sites from the first alignment, sequences were aligned, and the alignments were filtered as before.

Finally, the tools based on Direct fragmentation do not directly exploit paired-end information; they fragment every read before the first alignment and find fusion candidates aligning those fragments to a genomic reference.

Then, because the EPI slice-selection step is the same as for the anatomical, remove the z and size-z parameters from the affine adjustment set, and align the EPI data using the first alignment as the starting set.

"Hold strong in that first alignment," he said.

The first alignment page enables a switch of axes using 90-degree rotations (e.g., coronal to sagital).

In this case, acquire a relatively quick undistorted anatomical scan (e.g., T1 or fast-spin-echo T2) using a matched set of slices, then use this anatomical volume for a first alignment step.

First, alignments caused by short repetitive sequences were removed using a custom depth/coverage filter.

First, alignments must be estimated, and these can be difficult for some datasets with many insertions and deletions.

First, alignments reconstructed from wrong guide-trees carry phylogenetic information pointing towards that wrong topology (Supplementary Fig. S5).

For instance, the second split-alignment resulted in only 1-41-4% increased mapped reads compared with first alignments; however, the mapped mismatches were increased 20%-30 20%-30fferent samples.

First, alignments were generated for each pair of paralogous sequences and for each singleton locus along the duplicated region, in combination with their T. congolense homologs.