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The targets of a TF are defined using (i) ChIP-chip data in the first algorithm (just like many existing algorithms in the literature), (ii) TF binding data in the second algorithm, (iii) TF perturbation data in the third algorithm, and (iv) the intersection of TF binding and TF perturbation data in the fourth algorithm.

First, the algorithm and structure of the SOM are presented.

Result of the fragmentation algorithm and the first assignment step.

Four-fifths of the data were then used to train the linear classification algorithm and the remaining one-fifth of the data were used to test the algorithm.

Figure 10 Probability of the second stage detection of the first and second TSEEOB-CCS algorithms with different Δ values.

The first algorithm addresses MAP estimation of the Markov chain.

A "+" sign means that the performance of the two algorithms is significantly different and the first algorithm outperforms the second one (∑ R+ < ∑ R−).

Nevertheless, the Graemlin algorithm was the first algorithm capable of performing scalable, multiple network alignments [ 39].

The first algorithm is the Cyclical order weight/bias algorithm.

The first algorithm used the SteatoTest.

The implementation of the first algorithm is available on request from the first author.

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