Sentence examples for finite site from inspiring English sources

As to the mutation rate, we used a finite site mutation model with a per generation per site mutation rate, gamma distributed with a mean of ∼2.5×10−8 and a 95% confidence interval of 1.47×10−8 to 4.03×10−8.

The most appropriate method is the finite site, composite likelihood approach implemented in LDhat [ 31].

As mentioned above, D considers mutations occurring in an infinite site model and Dmod considers four nucleotide types in a finite site model.

We used the program MDIV ([ 51], http://cbsuapps.tc.cornell.edu/mdiv.aspx) to determine divergence time (Tdiv = t1 u) and the expected time of the most recent common ancestor (TMRCA = t2 u) for all sequences in the samples by the MCMC method within a likelihood framework using the finite site model (Hasegawa, Kishino, Yano [HKY], [ 52]).

But the results showed that the power increase became slower when θ >> ρ due to the fact that the limit of the lower bounds is determined by R min. Figure 6(a) shows the increase of local bounds with the increase of θ without recombination (ρ = 0) under the finite site model.

To study the performances of the local bounds under the finite site model, we used the ms program to simulate gene genealogies and then used the Seq-Gen program [ 15] to simulate DNA sequences with 2501bp in length given these gene genealogies.

The conductive fillers are modeled as a 3-D network of finite sites that are randomly positioned.

The conductive fillers are modeled as a 3D network of finite sites that are randomly positioned.

This model differs from ours in using an infinite sites, rather than a finite sites, model.

This allows comparison with the finite sites model, which explicitly does not allow recurrent positive selection at a single site.

Therefore, the model of epigenetic inheritance is analogous to the one of DNA substitution in the finite sites.