Sentence examples for finished reference from inspiring English sources

The genomes of Burkholderia SAR-1 and strain 383 were compared in silico to Burkholderia cenocepacia strain J2315 (representing a manually annotated and entirely finished reference genome) in order to estimate the gene content and homology of each strain.

The number of potential missing genes will be genome and assembly-specific, and this is difficult to assess in the absence of available finished reference genomes (Fraser et al., 2002).

Suppose we are given a set of contigs ={ c1,..., c n }, c i ∈ Σ*, and a set of already finished reference genomes ℛ ={ g1,..., g m }, g r ∈ Σ*.

The tree confirmed that SL1344 was the closest finished reference to the S. Typhimurium 135@ isolates, and therefore the most suitable reference for read mapping, SNP calling and gene content comparison.

The closest available finished reference genome sequence to the E. coli outbreak strain, Ec55989, shares this ST, and has formed the reference for phylogenetic and gene content analyses of the German outbreak in all published studies [ 27- 30].

The generation of our high quality finished reference genomes for the seven in-house sequenced SAG strains will provide a valuable resource for the analysis of future SAG draft genomes.

Population genomes obtained using this method were taxonomically assigned by placement in concatenated gene trees comprising all finished IMG reference genomes (Markowitz et al. 2012) (supplementary table S2, Supplementary Material online; see below).

BAIT also stratifies scaffold-stage assemblies, potentially accelerating the assembling and finishing of reference genomes.

With a flourish, Kerry finished his address with a reference to his decision to carry his two-year-old granddaughter on to the stage to sign the Paris agreement.

Read mapping to the available finished S. Typhimurium reference chromosome sequences (Table  2) using BWA0.7.5a [ 57] revealed the closest reference for all S. Typhimurium 135@ isolates was S. Typhimurium SL1344 (phage type DT44, accession NC_016810.1).

The results of this update meant that we began our searching where the previous review finished (insert anonymous reference).