Sentence examples for final alignment for from inspiring English sources
After removal of additional indel positions, the final alignment for divergence age estimations comprised 1,479 bp.
The final alignment for the 29 taxa consisted of 2,718 sites.
A final alignment for the rbcL and matK sequences was generated using back-translation in transAlign [ 57].
The final alignment for all subsequent dating analyses included 132 taxa, 5 loci, and 4,840 bp.
Bayesian and maximum likelihood methods were used to construct the phylogenetic tree using the final alignment for the identified MazF family TA modules.
Alignments containing more than 6 sequences were reduced to 6 sequences by rnazWindow.pl which optimizes the final alignment for a mean pairwise identity.
The final alignments for DBDs and LBDs are included as supporting files in PFAM format.
Final alignments for all consensus sequences are provided in Additional file 2: Dataset 1.
Final alignments for each locus were produced with SeaView and manually inspected by eye.
These individually aligned FA maps were subsequently averaged to create an intermediate FA template (12 degrees of freedom) for the final alignment of the FA maps using FNIRT nonlinear registration.
The final alignment of approximately 400 aa used for phylogenetic inference was cropped to include obvious regions of conservation and contained the predicted TPR and Rab5-binding domains (see Additional File 3 for aa sequences and Additional File 4 for alignment in FASTA format).
