Exact(19)
The candidate APs for filtering should be selected among the originally detected APs by the inequality (3).
Given the trade-off between filtering and not filtering, we investigated how much coverage is required before filtering should be used.
We explicitly mention that the software is not well suited for the analysis of raw output from genome-scale analyses, and that filtering should be performed a priori, as we conducted, with a separate Perl script, which is available with Veridical.
Because reconstructing the correct topology appears robust to bias in the estimate D (Fig. 3a vs 3c), precision is likely more important, and filtering should be done when it can lower the variance in the estimate D. This crossover point generally occurs between 5X and 8X, depending on k (Fig. 5b, dashed lines for filtering and solid lines for no filtering).
This filtering should be taken into account when looking at the analysis presented here.
Note: filtering should be done after grouping, as changing the grouping of a data set removes any data filter applied by the user within the current session.
Similar(41)
At that point, the filter should be replaced.
A ccd_id filter should be used to filter out unwanted chips, as shown in the examples.
For First Amendment purposes, filters should be judged according to the same standards as librarians.
You can tell if the filters should be replaced if you smell vapors through the mask.
The size of filter should be an odd <= the size of v1>.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com