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Cases were first detected in late June, and by July, the program achieved 100% cloth and pipe filter coverage and treated all unsafe water sources.
From 2008 to 2009, timely delivery of logistical support helped boost case containment (54 73%; Kapoeta counties reported 1,350 and 675 cases in 2008 and 2009, respectively), endemic village chemical vector control coverage (69 72%), and endemic village cloth filter coverage (84 99%), and cases declined (–50%).
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The temperature is expressed in natural units, and. Figure 9 Filtered coverage prediction of a WiMAX femtocell with a 3. 5 GHz measurements-based calibrated FDTD model.
Liberal filtering: coverage <80, and number of indel reads from each strand > = 1.
We designed two sets of rules: Normal filtering: coverage <80, and number of indel reads from each strand >1.
The filtering coverage previously applied was not used at this stage to avoid interference with the read density when examining gene expression variation.
Variant calling was carried out by using GATK [ 27] without duplicate read removal, by using hard filters: coverage at least 10-fold; genotype quality threshold, 50; SNP quality threshold, 30; and allele balance threshold, 0.75.
This Arabidopsis thaliana browse page also has a link to the complete HMMER output, where hits that did not pass our filters (coverage > 0.3 and E-value < 1 e-5) can also be retrieved.
Our pipeline called a total of 1,129,874 SNPs (the union of 47 clones) that passed through the initial filter (≥10X coverage and SNP quality ≥ 30) for a particular clone.
Contigs filtered with coverage of > 10 X. Contigs filtered with similarity (≥ 90%) and alignment length (≥ 200 amino acid residues) with their best matches used to analyze the top-hit species distribution.
Instead of filtering low coverage contigs, Velvet-SC merges them into a larger contig and recomputes their average coverage.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com