Sentence examples for filter alignment from inspiring English sources

Therefore, in this paper, we stick to the SRRC to ensure the filter alignment, even though it is not the most favorable choice for the OQAM and FMT schemes as it cannot exactly hold an orthogonal condition with a finite length.

After filter alignment and clone number identification, a BAC clone (2K13) containing a putative TcNPR1 fragment was obtained from a frozen stock.

For pfsearchV3, we implemented a master slave mechanism to analyse and adapt the load before each phase of the algorithm (heuristic, filter, alignment), thus providing more equitable shares between threads.

This information is then used to filter alignments before the search of variants.

It uses a precomputed NW table to filter alignments before conducting the extension with a dynamic programming algorithm.

Also, the filtration algorithm uses a combiner to filter alignments in memory and reports just the top two best alignments from its subset of alignments for a given read.

The same pipeline of reads filtering, alignment and FPKM calculation were performed on these single cells.

Duplicates were discarded by using the Picard MarkDuplicate tool (http://picard.sourceforge.net) and from the filtered alignment, the read count for each gene was calculated.

We used the combined protein dataset for the FA_desaturase pfam for this analysis and generated a tree of the filtered alignment using FastTree OpenMP v2 [ 34] with the JTT+CAT model.

After applying the two previously defined filters (alignment length >100 nucleotides; overlap percentage >99%), we obtained three new sequence data sets: RC japonica with 34,091 reads, RC indica with 33,888 reads, and RC nivara with 33,925 reads (Fig. 3).

This way, the same software and parameters were used for filtering, alignment to the eel genome and SNP discovery, i.e. using the same version of Stacks (version 1.09).