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Physiological traits related with photosynthate accumulation and partitioning included canopy biomass dry weight at mid-pod filling, pod partitioning index, pod harvest index, stem biomass reduction, and harvest index, were measured only in Awassa and Palmira.
The QTL for canopy biomass dry weight at mid-pod filling, pod harvest index, stem TNC, and SPAD meter reading were significant with threshold LOD scores of 3.125 whereas QTL for grain yield, stem biomass reduction, harvest index, and leaf area index were significant with LOD scores of 2.75.
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This is operated by an electro-mechanical system mounted within the tire; activation of the technology permits air to inflate a secondary air chamber, filling pods moulded into the tread of the tire and which contain the spikes.
Inflorescences reported in all results include only those with filling pods (aborted flowers were ignored).
The filled pod number was the difference between the total pod number and the empty pod number.
In the control treatment, one more minor QTL for filled pod number (8% PVE) was found on CaLG07.
In the control treatment, the stem + leaf weight, filled pod number and seed number explained up to 51%, 56%and49%9% variations in yield.
In 2011, both the control and salinity treatments did not differentiate the parents for any traits except for filled pod number and empty pod number in the control treatment (Table 2).
In the salinity treatment a few minor QTLs were identified for HI on CaLG04d in 2010, while in the control treatment minor QTLs were identified for yield, pod number, filled pod number and seed number on CaLG07 in 2011.
The co-mapping of QTLs for traits like ADM, stem + leaf weight, total pod number, filled pod number and seed number along with the yield QTL makes the two major genomic regions on LG 5 and LG 7 (as per the published maps) promising targets for future breeding of salinity tolerant chickpea.
The QTL analysis for seven (2010) and nine (2011) yield and yield-related traits detected 23 major QTLs across treatments for all traits (3 QTLs for ADM; 1 QTL for seed number; 1 QTL for pod number; 3 QTLs for yield; 2 QTLs for stem + leaf weight; 9 QTLs for HI; 4 for 100-seed weight) except for filled pod number and empty pod number (Additional file 6: Table S6).
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